Molecular Image 2 Graph/SMILES 相关文章

本文来源于各路集合:https://blog.csdn.net/justbeherhero/category_12041739.html

思考: https://mapengsen.blog.csdn.net/article/details/128617817


识别原子和骨架的位置和类型,然后组装

一、2022-BIB | ABC-Net: a divide-and-conquer based deep learning architecture for SMILES recognition from molecular image

ABC-Net:基于分治法的分子ImageToSMILES的DL架构

一些解析:BIB |基于分而治之的分子图片识别深度学习框架 - 知乎 

https://blog.csdn.net/justBeHerHero/article/details/127322013

 ABC-Net:从分子图像中进行SMILES识别的深度学习框架 - 墨天轮

论文: https://arxiv.org/abs/2002.10200

code :GitHub - zhang-xuan1314/ABC-Net: ABC-Net for molecular image recognition

扫描二维码关注公众号,回复: 14564106 查看本文章

二、2021-BNAIC/Benelearn | Self-labeling of Fully Mediating Representations by Graph Alignment 

paper:Self-labeling of Fully Mediating Representations by Graph Alignment | SpringerLink

code GitHub - biolearning-stadius/chemgrapher-self-rich-labeling

三、2022-Briefings in bioinformatics | Multi-modal chemical information reconstruction from images and texts for exploring the near-drug space

基于images-texts的Multi-modal结构信息重建以探索near-drug空间

【多模态】Multi-modal chemical information reconstruction from images and texts for exploring the_Pengsen Ma的博客-CSDN博客

https://blog.csdn.net/justBeHerHero/article/details/127397117

paper: Multi-modal chemical information reconstruction from images and texts for exploring the near-drug space | Briefings in Bioinformatics | Oxford Academic

四、2020-JCIM-ChemGrapher: Optical Graph Recognition of Chemical Compounds by Deep Learning

https://pubs.acs.org/doi/10.1021/acs.jcim.0c00459

https://blog.csdn.net/justBeHerHero/article/details/127223664

code:https://github.com/biolearning-stadius/chemgrapher-self-rich-labeling

Encoder-Decoder:

一、2021-Chemical Science | Img2Mol:accurate SMILES recognition from molecular graphical depictions

https://blog.csdn.net/justBeHerHero/article/details/127175730

Img2Mol – accurate SMILES recognition from molecular graphical depictions - Chemical Science (RSC Publishing)

codeGitHub - bayer-science-for-a-better-life/Img2Mol

 这个论文很简单,就是将image 通过CNN encoder ,然后通过CDDD层【把将SMILES标准化的模型中的512宽度的layer叫做CDDD】,再通过Decoder 将CNN encoder的信息成SMILES

与ABC-Net这种“ 拆分-识别-组装 ”的处理方式完全不同

二、2022_Robust Molecular Image Recognition: A Graph Generation Approach

paper:https://arxiv.org/pdf/2205.14311.pdf

https://blog.csdn.net/justBeHerHero/article/details/127238332

三、2022-Bioinformatics | MICER:A Pre-trained Encoder-Decoder Architecture for Molecular Image Captioning

https://blog.csdn.net/justBeHerHero/article/details/127244027

MICER: a pre-trained encoder–decoder architecture for molecular image captioning | Bioinformatics | Oxford Academic

Transformer:

一、2021-Cheminform | DECIMER 1.0: deep learning for chemical image recognition using transformers

https://blog.csdn.net/justBeHerHero/article/details/127188337

codeThe DECIMER 2.0:https://github.com/Kohulan/DECIMER-Image_Transformer

二、2021-Chemistry Methods | Image2SMILES: Transformer-Based Molecular Optical Recognition Engine

https://blog.csdn.net/justBeHerHero/article/details/127187994

https://chemistry-europe.onlinelibrary.wiley.com/doi/full/10.1002/cmtd.202100069

code GitHub - spacemanidol/Image2Smiles: Given an image of a molecule create a smiles or mol represenatation.

三、2022-Cheminform | SwinOCSR: end-to-end optical chemical structure recognition using a Swin Transformer

SwinOCSR+:基于Swin Transformer的end-to-end光学化学结构识别

paper : SwinOCSR: end-to-end optical chemical structure recognition using a Swin Transformer | Journal of Cheminformatics | Full Text

codeGitHub - suanfaxiaohuo/SwinOCSR

https://blog.csdn.net/justBeHerHero/article/details/127487296


四、2022-ICASSP | Image-to-Graph Transformers for Chemical Structure Recognition

Image-to-Graph Transformers for Chemical Structure Recognition | IEEE Conference Publication | IEEE Xplore

杂项

2021-Chemical Science【手写识别】 | ChemPix: automated recognition of hand-drawn hydrocarbon structures using deep learning

https://blog.csdn.net/justBeHerHero/article/details/127191454

ChemPix: automated recognition of hand-drawn hydrocarbon structures using deep learning - Chemical Science (RSC Publishing)

codehttps://github.com/mtzgroup/ChemPixCH

2022-Journal of Cheminformatics【手写识别】丨DECIMER—hand-drawn molecule images dataset

DECIMER—hand-drawn molecule images dataset | Journal of Cheminformatics | Full Text

 2022-JCIM-MolMiner: You only look once for chemical structure recognition

paper:https://arxiv.org/pdf/2205.11016.pdf

 2019-JCIM 【只是用了深度神经网络】| Molecular Structure Extraction From Documents Using Deep Learning

https://blog.csdn.net/justBeHerHero/article/details/127187714

https://pubs.acs.org/doi/10.1021/acs.jcim.8b00669


识别软件 InDraw 和 Mathpix OCR:

免费的InDraw:

浅谈化学结构识别工具 - 知乎

InDraw:结构式绘制“智”时代 - 知乎

聊一聊化学结构命名神器InDraw - 知乎

上海鹰谷公司于2018年5月公布了其结构式智能识别的专利,这篇长达12页的专利比较详细地介绍了对含有结构式图片的处理和提取方法。:【一种化学结构式的智能识别方法

一种化学结构式的智能识别方法专利_-启信宝

附:

我自己下载了一个,然后识别了一下,识别的真不行,果断卸载了

收费的Mathpix OCR:

Image to SMILES

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