VASP 5.4.4 保姆级安装全过程 (附带vaspkit)

1. 准备好安装包 VASP 5.4.4

2. VASP安装前的准备

  Install GNU Compiler

sudo apt-get install make build-essential g++ gfortran

  Install required VASP libraries (lapack, scalapack, openmpi, and fftw)

sudo apt-get install libblas-dev liblapack-dev libopenmpi-dev libscalapack-mpi-dev libfftw3-dev

3. VASP安装

   提取并修补

    打开vasp压缩包所在文件夹,进行一下四步

tar -zxvf vasp.5.4.4.tar.gz
gunzip patch.5.4.4.16052018.gz
cd vasp.5.4.4/
patch -p0 < ../patch.5.4.4.16052018

修改文件

在子目录下把arch文件夹中的makefile.include.linux_intel拷到上一级目录下改名为makefile.include。打开此文件,把其中的OFLAG参数里加入-xhost。

 

 完整makefile.include如下所示

# Precompiler options
CPP_OPTIONS= -DHOST=\"LinuxIFC\"\
             -DMPI -DMPI_BLOCK=8000 \
             -Duse_collective \
             -DscaLAPACK \
             -DCACHE_SIZE=4000 \
             -Davoidalloc \
             -Duse_bse_te \
             -Dtbdyn \
             -Duse_shmem

CPP        = fpp -f_com=no -free -w0  $*$(FUFFIX) $*$(SUFFIX) $(CPP_OPTIONS)

FC         = mpiifort
FCL        = mpiifort -mkl=sequential -lstdc++

FREE       = -free -names lowercase

FFLAGS     = -assume byterecl -w
OFLAG      = -O2 -mtune=native -m64
OFLAG_IN   = $(OFLAG)
DEBUG      = -O0

MKL_PATH   = $(MKLROOT)/lib/intel64
BLAS       =
LAPACK     =
BLACS      = -lmkl_blacs_intelmpi_lp64
SCALAPACK  = $(MKL_PATH)/libmkl_scalapack_lp64.a $(BLACS)

OBJECTS    = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d.o

INCS       =-I$(MKLROOT)/include/fftw

LLIBS      = $(SCALAPACK) $(LAPACK) $(BLAS)


OBJECTS_O1 += fftw3d.o fftmpi.o fftmpiw.o
OBJECTS_O2 += fft3dlib.o

# For what used to be vasp.5.lib
CPP_LIB    = $(CPP)
FC_LIB     = $(FC)
CC_LIB     = icc
CFLAGS_LIB = -O
FFLAGS_LIB = -O1
FREE_LIB   = $(FREE)

OBJECTS_LIB= linpack_double.o getshmem.o

# For the parser library
CXX_PARS   = icpc

LIBS       += parser
LLIBS      += -Lparser -lparser -lstdc++

# Normally no need to change this
SRCDIR     = ../../src
BINDIR     = ../../bin

#================================================
# GPU Stuff

CPP_GPU    = -DCUDA_GPU -DRPROMU_CPROJ_OVERLAP -DUSE_PINNED_MEMORY -DCUFFT_MIN=28 -UscaLAPACK

OBJECTS_GPU = fftmpiw.o fftmpi_map.o fft3dlib.o fftw3d_gpu.o fftmpiw_gpu.o

CC         = icc
CXX        = icpc
CFLAGS     = -fPIC -DADD_ -Wall -openmp -DMAGMA_WITH_MKL -DMAGMA_SETAFFINITY -DGPUSHMEM=300 -DHAVE_CUBLAS

CUDA_ROOT  ?= /usr/local/cuda/
NVCC       := $(CUDA_ROOT)/bin/nvcc -ccbin=icc
CUDA_LIB   := -L$(CUDA_ROOT)/lib64 -lnvToolsExt -lcudart -lcuda -lcufft -lcublas

GENCODE_ARCH    := -gencode=arch=compute_30,code=\"sm_30,compute_30\" \
                   -gencode=arch=compute_35,code=\"sm_35,compute_35\" \
                   -gencode=arch=compute_60,code=\"sm_60,compute_60\"

MPI_INC    = $(I_MPI_ROOT)/include64/

编译,构建VASP的std、gam和ncl

在如下图目录中运行:

make all

 或者

make std gam ncl

 运行时间较长

修改路径 

运行完后在bin文件夹中出现三个文件,其中可以选择修改vasp_std 为vasp,这里没修改。

修改系统环境:

vim ~/.bashrc

 添加路径

export PATH="$PATH:/home/xxxx/vasp.5.4.4/bin";

 复制vasp路径,我这里是:/home/xxxx/vasp.5.4.4/bin

 

 保存.bachrc,并更新

source ~/.bashrc

 运行vasp

在任意文件夹下放入INCAR、KPOINTS、POSCAR和POTCAR

输入:其中,如果改了vasp_std为vasp,代码中vasp_std要改成vasp,nohup意思为终端不输出过程信息,4为cpu数。

nohup mpirun -np 4 vasp_std INCAR

4. 完成

5. 安装vaspkit

官网下载压缩包

解压安装,修改路径(.bashrc和.vaspkit)

运行

到运行文件中INCAR、KPOINTS、POSCAR,生成POTCAR

vaspkit 103
or 
vaspkit 1
103

参考:

http://bbs.keinsci.com/thread-28200-1-1.html

https://zhuanlan.zhihu.com/p/436435793

http://bbs.keinsci.com/thread-31193-1-1.html 

https://www.bilibili.com/read/cv18613187 

https://zhuanlan.zhihu.com/p/435820148​​​​​​​ 

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转载自blog.csdn.net/qq_44785318/article/details/127613790
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