【1.1】Linux学习—grep命令

grep命令用于查找文件里符合条件的字符串

grep一般格式:grep 【选项】基本正则表达式 【文件】

常用grep选项有:

-c:只输出匹配行的个数

-i:不区分大小写(只适用于单字符)

-h:查询多文件时不显示文件名

-l:查询多文件时只输出包含匹配字符的文件名

-n:显示匹配行及行号

示例1:查找多个文件

grep "wujiadong" *.doc

所有doc文件中查找字符串 wujiadong

示例2:行匹配

[wujiadong@hcu05 linux_peixun]$ grep -c "GO" bb.txt
996

在bb.txt文件中有996行 包括了字符串GO

示例3:显示匹配行及行号

[wujiadong@hcu05 linux_peixun]$ grep -n "GO" bb.txt|head -2
1:id	baseMean	baseMean_Sample_A	baseMean_Sample_B	foldChange	log2FoldChangepval	padj	up_down	length	gene_id	gene	gene_product	GO_id	GO_term	pathway	pathway_description
2:NM_000060.3	362.708466415454	19.5140148148337	705.902918016074	36.1741509737647	5.17688725123487	2.39864855539595e-06	0.000970977033299914	Up	2084	686   BTD	biotinidase, transcript variant 3	GO:0004075,GO:0005576,GO:0005615,GO:0005730,GO:0005759,GO:0006766,GO:0006767,GO:0006768,GO:0007417,GO:0008544,GO:0043204,GO:0044281,GO:0045177,GO:0047708    biotin carboxylase activity|extracellular region|extracellular space|nucleolus|mitochondrial matrix|vitamin metabolic process|water-soluble vitamin metabolic process|biotin metabolic process|central nervous system development|epidermis development|perikaryon|small molecule metabolic process|apical part of cell|biotinidase activity	path:hsa00780,path:hsa01100,path:hsa04977	Biotin metabolism|Metabolic pathways|Vitamin digestion and absorption

行数输出在第一列,后跟包含GO的每一匹配行

示例4:显示非匹配行

[wujiadong@hcu05 linux_peixun]$ grep -v "GO" bb.txt|head -2
NM_000558.3	35.0517311014878	0	70.1034622029756	Inf	Inf	0.00593032393640629	0.314482689288408	Up	576	3039	HBA1	hemoglobin, alpha 1		      path:hsa05143,path:hsa05144	African trypanosomiasis|Malaria
NM_001077690.1	166.495722732067	0	332.991445464134	Inf	Inf	3.18349556556281e-07	0.000179691649223058	Up	6137	79796	ALG9	ALG9, alpha-1,2-mannosyltransferase, transcript variant 2			path:hsa00510,path:hsa01100	N-Glycan biosynthesis|Metabolic pathways

显示不包括GO的前两行

示例5:精确匹配

[wujiadong@hcu05 linux_peixun]$ grep  'Jason\>' f1.csv
102,Jason Smith,IT Manager

在抽取字符串后加 \> 精确匹配Jason。

示例6:大小写敏感,加-i

grep -i 'sept' data.txt

grep与正则表达式

示例1

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转载自blog.csdn.net/weixin_30935137/article/details/81146941