Bioinformatics analysis is inseparable from data resources and databases. Bioinformatics Database Classification Overview (First Edition) systematically sorts out commonly used functional databases.
Next, I will share 7 databases that we have undertaken to publish, including 4 NAR, 1 BIB, 1 Nature protocols, 1 Science Bulletin, and 1 iMETA, with a total impact factor of 100+, for readers.
A database of traditional Chinese medicine prescriptions, including information on prescriptions, medicinal materials, targets, diseases, pathways, etc.
The website is antique, beautifully designed, interactive exploration, network atmosphere,
Good appearance is a good stepping stone,
Published in NAR Magazine in 2018 .
（http://www.tcmip.cn/ETCM/）
Table display is too boring, key information interactive pie chart display, view, click to filter~~
Now the database is upgraded to the second version, with more functions and more displays (the network diagram is more beautiful, more biologically meaningful, and more interactive than the one below, but it cannot be released for the time being o(╥﹏╥)o), the third version Also in progress.
The other is `Prophage hunter`, which looks for active phages in bacterial genomes.
The page is minimal, but well-designed, custom genome browser interaction,
Published in NAR Magazine in 2019 . (https://pro-hunter.bgi.com/)
Bi-directional control of table and genome browsers
Another one is the marine natural product database, with beautiful pages and powerful functions! Published in the 2020 NAR Database Special Issue. (http://www.cmnpd.org)
Multi-modal combined search
Large animal intestinal flora database, with beautiful pages and powerful functions! Published in the 2022 NAR Database Special Issue. (http://www.ehbio.com/CRAMdb/)
The online analysis platform for high-throughput isolation, culture and identification of plant root bacteria was published in Nature Protocol in 2021.
What is more done is the display of molecular data, such as the display of transcriptome-related data , published in the BIB journal. (www.devomics.cn)
First of all, show the homepage , which can be customized by professional designers . It can be traditional or modern;
The global search box on the home page is similar to Google , and you can search by entering gene names, pathway names, and functional keywords.
The small carousel shows the analysis and result display that the website can do, and the full set of differential gene enrichment is interactive.
The four pie charts are linked to display the samples and attribute information included in the database, and the high-end atmosphere shows the connotation.
Then search, what information is displayed?
Genes, aliases, public database links, functional annotations, expression distributions, PPI networks, co-expression networks, whatever you want!
One gene is too small to draw the expression profile and modification profile of a group of genes; at the same time, it shows the relationship between methylation modification and gene expression.
The picture will not be shown, absolutely what I think!
The search is too simple (in fact, the function is very powerful), can you search with more conditions?
How is multi-omics presented? Can genome browsers be embedded?
The genome browser is a powerful display tool for multi-omics, see more:
IGV Genome Browser Visualizes High-Throughput Sequencing Data
Essential for high-throughput data analysis - introduction to using genome browser - 1
Essential for high-throughput data analysis - Introduction to Genome Browser - 2
Essential for high-throughput data analysis - Introduction to Genome Browser - 3
ChIP data is displayed at the same time IP, Inputsample abundance (this bimodal map can be detached and combined) and peakinformation, see the figure below.
It is also possible to display homologous species~
More online functions, sample clustering, screening, differential genes (sample-specific genes), functional enrichment (a small cloud platform has come out)
More interactive plots, chromosome maps, pie charts, box plots, interactive tables
More interactive display of sample information included in the database
This is also a homepage style, customizable as you go.
More map display
The time axis changes to one
One visit statistics page (this is a high-value customizable online drawing tool-the third edition of user visits, with a total visit volume of 200,000. I will make a friendly link for you, which can also promote visits)
Some of the above are listed, and more databases are still under construction, and will be released slowly after publication, and more presentations and demands are waiting for your proposal.
If you also have construction needs, please scan the QR code to contact us.
Past products (click on the picture to go directly to the text corresponding tutorial)
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Reply in the background with "The first wave of benefits in the Life Letter Collection" or click to read the original text to get a collection of tutorials
