RNA-Seq analysis --KEGG Enrichment Analysis

Admission to now has been little half a year, most recently just doing analysis of RNA-Seq, record your own growth trajectory.

 

The following is kegg enrichment analysis of gene expression with a difference I do clusterProfiler Arabidopsis:

# R bag loading required 
Library (clusterProfiler) 

# Loading I gene expression differences obtained edgeR 
Load ( "gene_all_up_down.Rdata") 


# up-regulated genes kegg enrichment analysis and a histogram 
y = enrichKEGG (gene_up, = organism 'ATH', pvalueCutoff = 0.05) 

barplot (Y, showCategory = 10) 


# loading of data, as well as down-regulated genes and all genes differentially expressed, are interested in what can be done

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Origin www.cnblogs.com/yznwjl/p/12057063.html