笔记 on JM's FSL for task fMRI

Contents

p2 QA #1_ Check your newly created NIfTI files

 

 


p2 QA #1_ Check your newly created NIfTI files

1. The sample data hierarchy

subjects(?)/subXXX/

  /BOLD/

    / QA

    /taskXXX_runXXX/bold.nii.gz

  /anatomy

  /behav

  /model/modelXXX/onsets/taskXXX_runXXX/conXXX.txt

 

 (https://www.bilibili.com/video/av61429264?p=2,04:40, 08:02, 08:55)

 

2. FIG supra, run in a txt file with a different set of different conditions / irritation / Comparative (Contrasts)

 

3. Before beginning treatment points to be checked

https://www.bilibili.com/video/av61429264?p=2,18:12)

 

  *[0-9] to list all numbers @ this position. i.e., ls cond00[0-9].txt to list  cond001.txt cond002.txt cond003.txt ... cond009.txt, if any of them exist.

  **dim4 listed with fslinfo represents # of volumes

  ***fslview T1.nii.gz works well to show orientation labels (exactly resemble the following pic)

 (https://www.bilibili.com/video/av61429264?p=2, 16:01)


 tbc

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Origin www.cnblogs.com/yusani/p/11985304.html