https://www.jianshu.com/p/2a7a36414734
#BiocManager::install("simplifyEnrichment")
#BiocManager::install("EnsDb.Hsapiens.v86")
#下载包 之后 手动安装
#install.packages("~/datasets/EnsDb.Hsapiens.v86_2.99.0.tar.gz", repos = NULL, type = "source")
#remotes::install_github("HaojiaWu/plot1cell",dependencies = TRUE)
library(plot1cell)
When installing R packages in R language, you will always encounter installation errors. In fact, many times it is caused by the mismatch between the R language version and the R package version. At this time, you need to manually install the R package yourself. I checked a lot. There are many and complicated methods in web articles. Let’s summarize them now.
No matter which method you use, you need to first go to the R package official website to find the link to the R package version you want to download. The
R official website link:
https://www.r-project.org
Select the mirror closest to you: https://mirrors. tongji.edu.cn/CRAN/Find
Packages -> Table of available packages, sorted by name
The first method:
Download the R package locally, and then install it in R.
Reference link:
https://blog.csdn.net/weixin_30832143/article/details/94986731
setwd("F:\\CNV\\Paper\\Case-control\\mHMM")#设置本地路径
install.packages("mHMM_1.0.zip",repos=NULL)#安装
Newbies don’t like this kind of thing very much, and it’s very troublesome to change the interface.
The second method:
highly recommended, download and install the R package directly in R. Xiaobai didn't know that software could be downloaded in R at first, so he downloaded it manually and silently, which made him cry stupidly and feel aggrieved╮(╯＿╰)╭.
Thanks to this friend, article link:
https://zhuanlan.zhihu.com/p/129331377
download.file("https://cran.r-project.org/src/contrib/Archive/amap/amap_0.6.tar.gz","amap_0.6.tar.gz")#下载R包
install.packages("amap_0.6.tar.gz",repos=NULL)#安装
The third method:
If you like to use the terminal, you can use the shell command in the terminal to download the R package and then install it.
The disadvantage is that you need to know the absolute path of the library of the R package, which is a bit demanding for newbies who are just starting out, 嘤嘤嘤〒▽〒.
In fact, the absolute path to the library of the R package is included in the report result returned by the installation software.
install.packages("stringi")
Uploading...re-upload canceled
Installation report
After knowing the absolute path, use the shell command in the terminal to download the R package and compile it.
wget -c https://cran.r-project.org/src/contrib/Archive/stringi/stringi_1.0-1.tar.gz#下载R包
R CMD INSTALL -l /path/to/your/library /path/to/your/downloaded/package #编译
The fourth method:
If you use a personal computer and have an R interface, you can actually operate it through the interface and visually install the R package manually. It is relatively stupid and suitable for friends outside the industry who are more novice than novices. What I show here is for mac os system, windows should be similar.
Open R -> Packages & Data -> Package Installer
Uploading...re-upload canceled
Find Package Installer
Enter the missing R package and click get list
Uploading...re-upload canceled
Find R package version
Select the R package that needs to be installed and click Install Selected to install it.
Uploading...re-upload canceled
Install
Author: Yin Xiaoao
Link: https://www.jianshu.com/p/2a7a36414734
Source: Jianshu
Copyright belongs to the author. For commercial reprinting, please contact the author for authorization. For non-commercial reprinting, please indicate the source.