Content Transfer: https://software.broadinstitute.org/gatk/documentation/tooldocs/4.0.1.1/picard_util_IntervalListTools.php
GATK IntervalListTools combined in picard
IntervalListTools
a plurality of operating features interval.
1. The combined two interval lists
java -jar picard.jar IntervalListTools \
ACTION=CONCAT \
I=input.interval_list \
I=input_2.interval_list \
O=new.interval_list
2. Merge two interval lists, and merge sort overlapping region
java -jar picard.jar IntervalListTools \
ACTION=CONCAT \
SORT=true \
UNIQUE=true \
I=input.interval_list \
I=input_2.interval_list \
O=new.interval_list
3. Extract Another INPUT INPUT sequence from the
shell java -jar picard.jar IntervalListTools \ ACTION=SUBTRACT \ I=input.interval_list \ SI=input_2.interval_list \ O=new.interval_list ### 4.查找input1.interval_list或input2.interval_list,和在input3.interval_list中的碱基:
shell
java -jar picard.jar IntervalListTools ACTION=INTERSECT I=input1.interval_list I=input2.interval_list SI=input3.interval_list O=new.interval_list
```