Life Forms POJ - 3294 (suffix array)

You may have wondered why most extraterrestrial life forms resemble humans, differing by superficial traits such as height, colour, wrinkles, ears, eyebrows and the like. A few bear no human resemblance; these typically have geometric or amorphous shapes like cubes, oil slicks or clouds of dust.

The answer is given in the 146th episode of Star Trek - The Next Generation, titled The Chase. It turns out that in the vast majority of the quadrant's life forms ended up with a large fragment of common DNA.

Given the DNA sequences of several life forms represented as strings of letters, you are to find the longest substring that is shared by more than half of them.

Input

Standard input contains several test cases. Each test case begins with 1 ≤ n ≤ 100, the number of life forms. n lines follow; each contains a string of lower case letters representing the DNA sequence of a life form. Each DNA sequence contains at least one and not more than 1000 letters. A line containing 0 follows the last test case.

Output

For each test case, output the longest string or strings shared by more than half of the life forms. If there are many, output all of them in alphabetical order. If there is no solution with at least one letter, output "?". Leave an empty line between test cases.

Sample Input

3
abcdefg
bcdefgh
cdefghi
3
xxx
yyy
zzz
0

Sample Output

bcdefg 
cdefgh 

? 


meaning of the questions: find the string appear in a different sequence number is greater than the longest substring in n / 2 the

idea: because it is the longest, we can soon expect ht array
then we have to ht array scanning, set up the left point interval L, a right end point R, if the string is not less than the type section comprising n / 2, then we look at the value corresponding to the left end section appears more than once, then the L ++, and then take the maximum fine
(I write trouble a)


  1 #include<iostream>
  2 #include<cstdio>
  3 #include<cstring>
  4 #include<algorithm>
  5 #include<cmath>
  6 using namespace std;
  7 
  8 const int maxn = 2e5+5;
  9 char s[maxn];
 10 int sa[maxn],t[maxn],t2[maxn],c[maxn],n,k;
 11 char ans[105][1005];
 12 void build_sa(int n,int m)
 13 {
 14     int i,*x=t,*y=t2;
 15     for(i=0;i<m;i++)c[i]=0;
 16     for(i=0;i<n;i++)c[x[i]=s[i]]++;
 17     for(i=1;i<m;i++)c[i]+=c[i-1];
 18     for(i=n-1;i>=0;i--)sa[--c[x[i]]]=i;
 19     for(int k=1;k<=n;k<<=1)
 20     {
 21         int p=0;
 22         for(i=n-k;i<n;i++)y[p++]=i;
 23         for(i=0;i<n;i++)if(sa[i] >= k)y[p++]=sa[i]-k;
 24         for(i=0;i<m;i++)c[i] = 0;
 25         for(i=0;i<n;i++)c[x[y[i]]]++;
 26         for(i=1;i<m;i++)c[i]+=c[i-1];
 27         for(i=n-1;i>=0;i--)sa[--c[x[y[i]]]] = y[i];
 28         swap(x,y);
 29         p=1,x[sa[0]]=0;
 30         for(i=1;i<n;i++)
 31             x[sa[i]] = y[sa[i-1]] == y[sa[i]] && y[sa[i-1]+k] == y[sa[i]+k]?p-1:p++;
 32         if(p>=n)break;
 33         m=p;
 34     }
 35 }
 36 
 37 int ht[maxn],rk[maxn];
 38 
 39 void getHeight(int n,int m)
 40 {
 41     int i,j,k=0;
 42     for(i=0;i<n;i++)rk[sa[i]] = i;
 43     for(i=0;i<n-1;i++)
 44     {
 45         if(k)k--;
 46         if(s[i] == '$')continue;
 47         int j = sa[rk[i]-1];
 48         while(s[i+k] == s[j+k] && s[i+k] != '$')k++;
 49        // printf("%d   %d    %d\n",i,j,k);
 50         ht[rk[i]] = k;
 51     }
 52 }
 53 
 54 int len[105];
 55 int pos[maxn];
 56 int vis[105];
 57 int pre[maxn];
 58 int f[maxn][20];
 59 void st_pre(int n)
 60 {
 61     for(int i=1;i<=n;i++)f[i][0] = ht[i];
 62     int t = log2(n)+1;
 63     for(int j=1;j<t;j++)
 64     {
 65         for(int i=1;i<=n;i++)
 66         {
 67             f[i][j] = min(f[i][j-1],f[i+(1<<(j-1))][j-1]);
 68         }
 69     }
 70 }
 71 
 72 int RMQ(int i,int j)
 73 {
 74     if(i > j)swap(i,j);
 75     i++;
 76     int k = pre[j-i+1];
 77     //printf("%d     %d       %d\n",k,f[i][k],f[j-(1<<k)+1][k]);
 78     return min(f[i][k],f[j-(1<<k)+1][k]);
 79 }
 80 
 81 int sta[maxn];
 82 int main()
 83 {
 84     for(int i=1;i<maxn;i++)pre[i] = log2(i);
 85     while(~scanf("%d",&k) && k)
 86     {
 87         memset(len,0,sizeof(len));
 88         memset(vis,0,sizeof(vis));
 89         int top = 0,ltop = 0,tot = 0;
 90         for(int i=1;i<=k;i++)
 91         {
 92             scanf("%s",s+len[i-1]);
 93             len[i] = strlen(s);
 94             s[len[i]] = '$';
 95             len[i]++;
 96         }
 97         if(k == 1)
 98         {
 99             for(int i=0;i<len[1]-1;i++)printf("%c",s[i]);
100             puts("");
101             continue;
102         }
103         build_sa(len[k],130);
104         getHeight (referred to as [k], k);
105          st_pre (referred to as [a] - 1 );
106          pos [a] = upper_bound (only + 1 , only the + 1 -a, the [a] + 1 ) - only;
107          vis [pos [k]] = 1 ;
108          int ans_num = 0 ;
109          int cnt =   1 ;
110          ltop = 1 ;
111          hundred [top ++] = pos [a];
112          int limit = ceil (a * 1.0 / 2 );
113          if(limit * 2 == k)limit++;
114 //        for(int i=5;i<len[k];i++)
115 //        {
116 //            printf("%d  %d %d ",i,sa[i],upper_bound(len+1,len+1+k,sa[i]+1)-len);
117 //            for(int j=sa[i];j<len[k];j++)
118 //            {
119 //                if(s[j] != '$')printf("%c",s[j]);
120 //            }
121 //            puts("");
122 //        }
123         for(int i=k+1; i <len [k]; i ++ )
 124          {
 125              pos [i] = UPPER_BOUND (len + 1 , len + 1 + k, said [i] + 1 ) - len;
126              sta [++ top] = pos [i];
127              if (! View [pos [i]])
 128              {
 129                  show [pos [i]] = 1 ;
130                  cnt ++ ;
131              }
 132              else 
133              {
 134                  show [pos [i]] ++ ;
135                  int tmp =0;
136                 while(sta[top-tmp] == sta[ltop] && top - tmp > ltop)
137                 {
138                   //  printf("%d    %d   %d     %d    \n",ltop,top-tmp,sta[ltop],sta[top-tmp]);
139                     tmp++;
140                  //   printf("%d    ------------- %d       %d\n",ltop,pos[ltop+k-1],vis[pos[ltop+k-1]]);
141                     vis[pos[ltop+k-1]]--;
142                     ltop++;
143                 }
144             }
145             if(cnt > limit)
146             {
147                 vis[pos[ltop+k-1]]--;
148                 ltop++;
149                 cnt--;
150                 //if(i == 26)printf("%d   %d    %d    %d ========================\n",ltop,pos[ltop+k-1],vis[pos[ltop+k-1]],cnt);
151                 while(vis[pos[ltop+k-1]] > 1)
152                 {
153                     vis[pos[ltop+k-1]]--;
154                     ltop++;
155                 }
156             }
 157  
158              if (cnt == limit)
 159              {
 160                  while (am [pos [LTOP k + 1 ]]> 1 )
 161                  {
 162                      am [pos [LTOP k + 1 ]] - ;
163                      LTOP ++ ;
164                  }
 165                  int tmp = RMQ (LTOP k + 1 , i);
166                  if (tmp> ans_num)
 167                  {
 168                      ans_num = tmp;
169                      tot = 0 ;
170                      strncpy (years [tot ++], s + his [i], ans_num);
171                      years [earlier] [ans_num] = ' \ 0 ' ;
172                     // printf ( "% c ===% d \ n", s [his [i]] his [i]); 
173                  }
 174                  else  if (tmp == ans_num && tmp)
 175                  {
 176                       // printf ( "% c ===% d \ n", s [his [i]] his [i]); 
177                       if (strncmp (years [tot], the s + [i], ans_num)) strncpy (years [tot ++], s + his [i], ans_num) years [tot] [ans_num] = ' \ 0 ';
178                 }
179             }
180            // printf("%d      %d   ===   %d",i,ltop+k-1,cnt);
181             //printf("                      %d\n",ans_num);
182            // printf("%d          %d                  %d\n",ltop+k-1,i,cnt);
183         }
184        // printf("%d ---\n",ans_num);
185         if(!tot)puts("?");
186         else for(int i=1;i<=tot;i++)printf("%s\n",ans[i]);
187         puts("");
188     }
189 }
View Code

 

 

Guess you like

Origin www.cnblogs.com/iwannabe/p/11483408.html