BraTS 2021 Brain Tumor Segmentation Dataset Introduction

1. Background introduction

The brain tumor segmentation challenge (BraTS Challenge) is the oldest among all competitions of the International Medical Image Computing and Computer Assisted Intervention Society (MICCAI), and has been held for 10 consecutive years , is one of the hottest competitions in medical image processing.

Each challenge in 2017 and after contains three data sets, namely training set (Training data), validation set (Validation data) and test set (Test data)

The images and labels of the training set and the images of the verification set can be downloaded through official channels and Kaggle. The address is at the end of the article. The verification set label is not public, but the inference results can be uploaded on the official platform, and the platform will automatically score. The test set is only available for players to download during the competition time.

Table 1 Data scale of the BraTS Challenge over the years

years

total number of cases

Number of cases in the training set

The number of cases in the validation set

Number of cases in the test set

2012

50

35

none

15

2013

60

35

none

25

2014

238

200

none

38

2015

253

200

none

53

2016

391

200

none

191

2017

477

285

46

146

2018

542

285

66

191

2019

626

335

125

166

2020

660

369

125

166

2021

2040

1251

219

570

2. Data description

Each case of BraTS contains four modalities of MRI (Magnetic Resonance Imaging, MRI), and the dimension of each modality is 240×240×155 (L×W×H)

Four modes:

  1. T1

T1 imaging is good for observing the anatomical structure, but the lesion is not clear enough

  1. T1ce

Inject a contrast agent into the blood before the subject undergoes MRI to make the area with active blood flow more obvious in the imaging, which is an important criterion for tumor enhancement

  1. T2

T2 imaging, the lesion is clearly displayed, and the entire tumor can be judged

  1. FLAIR

T2 pressure water image (suppresses the high signal of cerebrospinal fluid), the more water content is more eye-catching, it can judge the edema area around the tumor

Picture from sample BraTS2021_00068

3. Label description

label 0: background (background)

label 1:坏死肿瘤核心(necrotic tumor core,NCR)

label 2:瘤周围水肿区域(peritumoral edema,ED)

label 4:增强肿瘤(enhancing tumor,ET)

比赛要求按区域进行分割,最终需识别出三个子区域:整颗肿瘤(包括label1、2、4)、肿瘤核心(包括label1、4)以及增强肿瘤(只包括label4)

四、评价指标

赛会官方给出了两个评价指标,dice分数和豪斯多夫距离。其中,Dice分数比豪斯多夫距离更重要。

  1. Dice分数

衡量两个集合的重合程度,是判断预测区间与Ground truth符合程度的主要指标

公式为:

  1. Hausdorff距离(HD95)

度量两个点集间的距离,判断预测边缘与真实边缘的差距

公式为:

五、相关链接

a. 官网链接:BraTS Continuous Evaluation

注册后可下载BraTS 2021 Traning data的图像和标签以及Validation data中的图像。详情请点击链接,有详细的参加教程。

b. Kaggle:BRaTS 2021 Task 1 Dataset

注册后可下载BraTS 2021 Traning data的图像和标签

c. 赛会原论文:The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification

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Origin blog.csdn.net/CarryEKAIruiui/article/details/129405809