RNA-seq数据挖掘 | NCBI | GEO

ARCHS4 - 人鼠RNA-seq

TPIA - 安徽农大 茶树基因组

TMDB - 安徽农大 代谢物

Tea plant Genome Database - 昆明植物研究所 基因组

两套基因组及注释文件的评估，到底用哪一个？

实验设计 - 方差分析，学Fisher

评价主流处理对茶树次级代谢的影响（看哪个的处理最多）

问题：

一个未知的植物的基因是怎么注释的？

如何把RNA-seq得到基因的表达？如何得到定量的信息？

文章：

Massive mining of publicly available RNA-seq data from human and mouse

DaMiRseq—an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification

RNA-seq based transcriptomic analysis uncovers α-linolenic acid and jasmonic acid biosynthesis pathways respond to cold acclimation in Camellia japonica 

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

Transcriptome analysis of differentially expressed genes involved in selenium accumulation in tea plant (Camellia sinensis). - 2018

两篇茶树基因组的文章：

Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality  - PNAS

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis - Mol Plant